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Systematic ReviewSystematic Review
Open Access

The diagnostic accuracy of RT-PCR from self-collected saliva versus nasopharyngeal sampling

A systematic review and meta-analysis

Do Hyun Kim, Mohammed A. Basurrah, Jae Hong Han, Sung Won Kim and Se Hwan Hwang
Saudi Medical Journal January 2022, 43 (1) 9-30; DOI: https://doi.org/10.15537/smj.2022.43.1.20210743
Do Hyun Kim
From the Department of Otolaryngology-Head and Neck Surgery (DH. Kim, Han, SW. Kim), Seoul Saint Mary’s Hospital; from the Department of Otolaryngology-Head and Neck Surgery (Hwang), Bucheon Saint Mary’s Hospital, College of Medicine, The Catholic University of Korea, Seoul, Korea, and from the Department of Surgery (Basurrah), College of Medicine, Taif University, Taif, Kingdom of Saudi Arabia.
MD, PhD
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Mohammed A. Basurrah
From the Department of Otolaryngology-Head and Neck Surgery (DH. Kim, Han, SW. Kim), Seoul Saint Mary’s Hospital; from the Department of Otolaryngology-Head and Neck Surgery (Hwang), Bucheon Saint Mary’s Hospital, College of Medicine, The Catholic University of Korea, Seoul, Korea, and from the Department of Surgery (Basurrah), College of Medicine, Taif University, Taif, Kingdom of Saudi Arabia.
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Jae Hong Han
From the Department of Otolaryngology-Head and Neck Surgery (DH. Kim, Han, SW. Kim), Seoul Saint Mary’s Hospital; from the Department of Otolaryngology-Head and Neck Surgery (Hwang), Bucheon Saint Mary’s Hospital, College of Medicine, The Catholic University of Korea, Seoul, Korea, and from the Department of Surgery (Basurrah), College of Medicine, Taif University, Taif, Kingdom of Saudi Arabia.
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Sung Won Kim
From the Department of Otolaryngology-Head and Neck Surgery (DH. Kim, Han, SW. Kim), Seoul Saint Mary’s Hospital; from the Department of Otolaryngology-Head and Neck Surgery (Hwang), Bucheon Saint Mary’s Hospital, College of Medicine, The Catholic University of Korea, Seoul, Korea, and from the Department of Surgery (Basurrah), College of Medicine, Taif University, Taif, Kingdom of Saudi Arabia.
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Se Hwan Hwang
From the Department of Otolaryngology-Head and Neck Surgery (DH. Kim, Han, SW. Kim), Seoul Saint Mary’s Hospital; from the Department of Otolaryngology-Head and Neck Surgery (Hwang), Bucheon Saint Mary’s Hospital, College of Medicine, The Catholic University of Korea, Seoul, Korea, and from the Department of Surgery (Basurrah), College of Medicine, Taif University, Taif, Kingdom of Saudi Arabia.
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  • For correspondence: [email protected]
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    - Summary of the search strategy.

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    Figure 2

    - Forest plot of the diagnostic odds ratios of the included studies.

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    Figure 3

    - Area under the summary receiver operating characteristic (SROC) curve of the included studies. CI: confidence interval

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    Table 1

    - Subgroup analysis of ethnicity, saliva collection method, and participants’ symptoms.

    SubgroupStudy (n)DORSensitivitySpecificityAUCNPVPPV
    95% CIs
    I2
    Self-collected saliva (total)41196.20220.84760.98170.9550.94670.9404
    [117.8833-326.5546][0.8045-0.8826][0.9707-0.9887][0.9130-0.9678][0.9122-0.9599]
    82%87.3%89%96.4%83.2%
    Regions
     North America20250.43210.87980.9807 0.96350.9275
    [120.4677-520.6066][0.8182-0.9224][0.9646-0.9896] [0.9265-0.9822][0.8801-0.9571]
    81.1%84.5%87.2% 94.1%81.1%
     Asia1292.30750.79380.9766 0.92830.9175
    [35.8172-237.8934][0.6970-0.8656][0.9297-0.9924] [0.8056-0.9759][0.8410-0.9589]
    85.6%87.1%94.7% 0.9283 [0.8056-0.9759]0.9175 [0.8410-0.9589]
     Europe6212.18210.80800.9852 0.91430.9676
    [117.6169-382.7785][0.6984-0.8844][0.9751-0.9912] [0.7872-0.9685][0.9369-0.9836]
    0%82.4%0% 95%30.9%
     South America2748.10440.88140.9924 0.91890.9839
    [171.1188-3270.5945][0.7180-0.9559][0.9321-0.9992] [0.8642-0.9527][0.9378-0.9960]
    0%71.2%35.1% 5.2%0%
     Oceania1269.50000.84620.9800 0.89090.9706
    [31.0018-2342.7756][0.6974-0.9292][0.8712-0.9972] [0.7777-0.9502][0.8186-0.9959]
    NANANA NANA
     P-value 0.19790.3890.8652 0.28330.079
    Collection method
     Only oral cavity saliva26215.15660.83650.9827 0.94960.9367
    [110.2014-420.0706][0.7793-0.8812][0.9713-0.9896] [0.9111-0.9719][0.9007-0.9602]
    84%87.4%84.4% 96.1%80.9%
     Only oral cavity saliva (not defined)8237.42460.89190.9820 0.97310.9173
    [61.4927-916.7010][0.8432-0.9268][0.9035-0.9969] [0.9269-0.9904][0.7993-0.9686]
    85.2%28.7%96.3% 89.7%86.0%
     Enhanced saliva7127.22540.83530.9779 0.88230.9654
    [41.0992-393.8348][0.6844-0.9222][0.9338-0.9928] [0.6404-0.9693][0.9075-0.9875]
    67.0%91.7%75.7% 2.084270.9%
     P-value 0.70010.22820.928 0.21760.4355
    Patient symptom
     Symptomatic22245.62220.88510.9791 0.95220.9495
    [111.2860-542.1192][0.8497-0.9130][0.9580-0.9898] [0.9124-0.9744][0.9103-0.9721]
    80.6%71.0%87.3% 92.2%80.3%
     Mixed15159.46380.82080.9783 0.91640.9435
    [72.7019-349.7664][0.7399-0.8806][0.9588-0.9886] [0.8313-0.9606][0.9003-0.9687]
    83.4%90.7%85.6% 97.0%82.4%
     Asymptomatic4184.89910.70490.9933 0.97720.8483
    [44.5856-766.7872][0.4705-0.8653][0.9673-0.9987] [0.8563-0.9968][0.6869-0.9345]
    80.3%82.3%92.3% 97.0%71.2%
     P-value 0.74690.030.3924 0.3290.0879
    • DOR: diagnostic odds ratio, CI: confidence interval, AUC: area under the curve, NPV: negative predictive value, PPV: positive predictive value

  • PICOTS componentDetails
    ParticipantsPatients with COVID-19 suspected symptoms or asymptomatic population screening
    InterventionsSaliva specimens RT-qPCR results of detect SARS-CoV-2
    ComparisonsNaso/oropharyngeal specimens RT-qPCR results of detect SARS-CoV-2
    OutcomesDiagnostic accuracy, specificities, and negative predictive values analysis
    TimingsFrom inception to August 2021
    Study designA systematic review and meta-analysis
    • COVID-19: coronavirus disease-19, RT-qPCR: reverse transcription quantitative polymerase chain reaction, SARS-CoV-2: severe acute respiratory syndrome coronavirus-2

  • StudyStudy designNumberGender (male/female)Age (years), median (range) or mean±SDNationalityParticipantsCollecting methodCorrelationTPFNFPTN
    Williams et al,10case-control89NRNRAustraliasymptomaticOnly oral cavity saliva 336149
    Landry et al,13cohort124NRNRUSA0.851305089
    Griesemer et al,19463246/11714-77USAmixedOral cavity saliva (not defined)911413345
    Bhattacharya et al,25case-control74NRNRIndiasymptomatic5350106
    Byrne et al,26cohort11061/49NREnglandOnly oral cavity saliva122096
    Caulley et al,201939NRNRCanadamixed3422141869
    Hanson et al,14354188/16635 (18-75)USAsymptomatic0.9127556268
    Moreno-Contreras et al,12182116/13741±14.4MexicoOral cavity saliva (not defined) 411128102
    Pasomsub et al,7cross-sectional20069/13136 (28-48)ThailandOnly oral cavity saliva0.8511632179
    Skolimowska et al,11cohort13143/8939 (30-51)England 1531112
    Vaz et al,1615546/10340 (33-48.5)Brazil0.922674282
    Yokota et al,8 (airport)1763927/832/4 (unknown)33.5 (22.6-47.4)JapanasymptomaticOral cavity saliva (not defined)4101758
    Yokota et al,8 (contact)16144/26/91 (unknown)44.9 (29.8-66.4)Japan3836114
    Güçlü et al,17cross-sectional6437/2751.04±17.9Turkeysymptomatic0.744234433
    Senok et al,21401329/7235.5±9.5UAEasymptomaticOnly oral cavity saliva0.681979366
    Altawalah et al,18891NRNRKuwaitsymptomaticEnhanced saliva0.8142875718529
    Procop et al,15224NRNRUSAsymptomatic 3801177
    Kandel et al,23cohort429295/13442 (30-54)CanadamixedOnly oral cavity saliva0.913943383
    Braz-Silva et al,2420175/12640 (31-52)Brazilsymptomatic55150131
    Babady et al,2287NRNRUSAEnhanced saliva161169
    Dogan et al,27cross-sectional98NRNRTurkeyOnly oral cavity saliva3025538
    Wong et al,28retrospective229NRNRChinamixed104183770
    Iwasaki et al,29cross-sectional66NRNRJapansymptomatic0.87481166
    Kojima et al,30prospective cross-sectional45NR45 (21-53)USAEnhanced saliva203616
    McCormick-Baw et al,31155NRNRUSAOnly oral cavity saliva (not defined)4721105
    Miller et al,32cross-sectional91NRNRUSAmixedOnly oral cavity saliva331156
    Vogels et al,33prospective cross-sectional67NRNRUSAOnly oral cavity saliva (not defined)322330
    Boerger et al,34281NRNRUSAOnly oral cavity saliva3032246
    Toppings et al,35cross-sectional63NRNRCanada282033
    Xun et al,36104NRNRUSA282173
    Masse et al,37prospective cross-sectional14363/8035 (22.5-49)FrancesymptomaticEnhanced saliva0.89515285
    Sasikala et al,38200140/6037.9±12.8Indiamixed 12846026
    Mohd Thabit et al,399666/3034±26 (12-95)MalaysiaOnly oral cavity saliva0.694511436
    Fernandes et al,40cohort22691/135NRPortugal 67134142
    Marx et al,41cross-sectional730420/310NRUSAsymptomatic/mixed/asymptomatic0.924686436
    Abasiyanik et al,42cohort92NR45 (30.58)USAsymptomatic160769
    Alkhateeb et al,43prospective cross-sectional4826/2239.9±15.5USAsymptomatic/mixed/asymptomaticEnhanced saliva123018
    Bidkar et al,44cross-sectional8049/3136.4IndiamixedOnly oral cavity saliva1328233
    Stokes et al,45prospective cross-sectional14575/7039.4Canadasymptomatic1211725
    Fernández-González et al,4622991/12839 (21-48)Spainmixed0.853974171
    Herrera et al,48cross-sectional study2107NRNRMexicoasymptomatic0.85213934101867
    Trobajo-Sanmartín et al,47prospective cross-sectional674374/300NRSpainmixed 1681563309
    • SD: standard deviation, TP: true positive, FN: false negative, FP: false positive, TN: true negative NR: not reported

  • ReferenceRisk of biasConcerns about application
    Patient selectionIndex testReference standardFlow and timingPatient selectionIndex testReference standard
    Williams et al,10LowLowLowLowLowLowLow
    Landry et al,13LowLowLowUnclearLowLowLow
    Griesemer et al,19LowLowLowLowLowUnclearLow
    Bhattacharya et al,25LowLowLowUnclearLowUnclearLow
    Byrne et al,26LowLowLowLowLowLowLow
    Caulley et al,20LowLowLowUnclearLowLowLow
    Hanson et al,14LowLowLowUnclearLowLowLow
    Moreno-Contreras et al,12LowLowLowUnclearLowUnclearLow
    Pasomsub et al,7LowLowLowLowLowLowLow
    Skolimowska et al,11LowLowLowUnclearLowLowLow
    Vaz et al,16LowLowLowLowLowLowLow
    Yokota et al,8LowLowLowUnclearLowUnclearLow
    Güçlü et al,17LowLowLowLowLowUnclearLow
    Senok et al,21LowLowLowHighLowLowLow
    Altawalah et al,18LowLowLowHighLowLowLow
    Procop et al,15LowLowLowUnclearLowLowLow
    Kandel et al,23LowLowLowLowLowLowLow
    Braz-Silva et al,24LowLowLowUnclearLowLowLow
    Babady et al,22UnclearLowLowUnclearLowLowLow
    Dogan et al,27LowLowLowUnclearLowUnclearLow
    Wong et al,28LowLowLowLowLowLowLow
    Iwasaki et al,29LowLowLowUnclearLowLowLow
    Kojima et al,30LowLowLowLowLowLowLow
    McCormick-Baw et al,31LowLowLowUnclearLowUnclearLow
    Miller et al,32LowLowLowLowLowUnclearLow
    Vogels et al,33LowLowLowHighLowLowLow
    Boerger et al,34LowLowLowHighLowLowLow
    Toppings et al,35LowLowLowUnclearLowLowLow
    Xun et al,36LowLowLowLowLowLowLow
    Masse et al,37LowLowLowUnclearLowLowLow
    Sasikala et al,38UnclearLowLowUnclearLowLowLow
    Mohd Thabit et al,39LowLowLowUnclearLowUnclearLow
    Fernandes et al,40LowLowLowLowLowLowLow
    Marx et al,41LowLowLowUnclearLowLowLow
    Abasiyanik et al,42LowLowLowLowLowLowLow
    Alkhateeb et al,43LowLowLowUnclearLowUnclearLow
    Bidkar et al,44LowLowLowLowLowUnclearLow
    Stokes et al,45LowLowLowHighLowLowLow
    Fernández-González et al,46LowLowLowHighLowLowLow
    Herrera et al,48LowLowLowUnclearLowLowLow
    Trobajo-Sanmartín et al,47LowLowLowLowLowLowLow
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Saudi Medical Journal: 43 (1)
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The diagnostic accuracy of RT-PCR from self-collected saliva versus nasopharyngeal sampling
Do Hyun Kim, Mohammed A. Basurrah, Jae Hong Han, Sung Won Kim, Se Hwan Hwang
Saudi Medical Journal Jan 2022, 43 (1) 9-30; DOI: 10.15537/smj.2022.43.1.20210743

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The diagnostic accuracy of RT-PCR from self-collected saliva versus nasopharyngeal sampling
Do Hyun Kim, Mohammed A. Basurrah, Jae Hong Han, Sung Won Kim, Se Hwan Hwang
Saudi Medical Journal Jan 2022, 43 (1) 9-30; DOI: 10.15537/smj.2022.43.1.20210743
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  • Article
    • Abstract
    • Methods
    • Results
    • Discussion
    • Acknowledgment
    • Appendix 1 - Participants, interventions, comparisons, outcomes, timings, and study design (PICOTS)
    • Appendix 2 - Study characteristics
    • Appendix 3 - Methodological quality of all included studies
    • Appendix 4 - Forest plots of the sensitivity of the included studies
    • Appendix 5 - Forest plots of the specificity of the included studies
    • Appendix 6 - Forest plots of the negative predictive value of the included studies
    • Appendix 7 - Forest plots of the positive predictive value of the included studies
    • Appendix 8 - Forest plots of A) the sensitivity, B) the specificity, C) the negative predictive value, and D) the positive predictive value regarding the effect of geographic differences on self-collected saliva for COVID-19
    • Appendix 9 - Forest plots of A) the sensitivity, B) the specificity, C) the negative predictive value, and D) the positive predictive value regarding the effect of saliva collection method on self-collected saliva for COVID-19
    • Appendix 10 - Forest plots of A) the sensitivity, B) the specificity, C) the negative predictive value, and D) the positive predictive value regarding the effect of presence or absence of symptoms on the diagnostic odds ratios on self-collected saliva for COVID-19
    • Appendix 11 - The effect of geographic differences on the diagnostic odds ratios of self-collected saliva for COVID-19
    • Appendix 12 - The effect of saliva collection method on the diagnostic odds ratios of self-collected saliva for COVID-19
    • Appendix 13 - The effect of presence or absence of symptoms on the diagnostic odds ratios of self-collected saliva for COVID-19
    • Footnotes
    • References
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